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Department of Pharmaceutical Microbiology

Department of Pharmaceutical Microbiology

Pharmaceutical Microbiology, studies the properties of microorganisms that cause infections in humans, the diseases caused by microorganisms and microbiological methods for the diagnosis of these diseases. In addition, the production of antimicrobial agents and microbial products, cosmetics and pharmaceuticals microbiological quality control procedures, methods of sterilization-disinfection and general hygiene issues such as interest-enters the Pharmaceutical Microbiology. Our department is an interdisciplinary field of science in the field of Pharmaceutical Microbiology and aims to educate individuals such as pharmacists, basic scientists and researchers assimilated the basic concepts and applications in all areas of the profession. In addition, our department also aims to current research by following the developments closely in the field of Pharmaceutical Microbiology and Medical Microbiology serving public health and transfer the knowledge to the world of science, industry and the society in national and international platform, most effectively.

Departmental Facilities

There are 2 laboratories (40m2 each) in our department. In these laboratories, there are available technical equipments and working conditions for performing classic microbiological culture studies, advanced molecular microbiological diagnosis and molecular epidemiological studies. In research laboratory, antimicrobial activity studies, nucleic acid amplification-based diagnostic and further typing methods such as PCR, PCR-RFLP, rt-PCR, DNA sequencing as well as immunochemical assay methods such as Westernblotting, Dot blotting and ELISA for the diagnosis and characterization of bacteria, fungi, viruses and parasites are applied successfully. In addition, our academic staffs are the project partners within a project established an infrastructure, advanced molecular diagnostic laboratory of the early diagnosis of cancer and miRNA-based cancer diagnostic studies conducted in Mersin University Research Center for Advanced Technology Education (MEITAM). Our department offers the opportunity to research and education on nanotechnology based high capacity Real-Time PCR system estabilished in this molecular diagnosis laboratory to our students.

Completed Theses:

1- Advisor: Assoc. Prof. Dr. Aylin DÖĞEN

Graduate Student: Müge ARIBAL ÇELİK

Thesis Title: Investigation Characterization of the Sexual Reproduction of Candida albicans

Thesis Defense Exam Date: 19.04.2019

2- Advisor: Assoc. Prof. Dr. Aylin DÖĞEN

Graduate Student: Deniz AKTAŞ

Thesis Title: Investigation of Cryptococcus Species in Environmental Specimens and Determination of Sex Type

Thesis Defense Exam Date: 15.11.2019

3- Advisor: Assist. Prof. Dr. Mahmut ÜLGER

Graduate Student: Nurcihan BİLTEKİN

Thesis Title: Genotyping of Mycobacterium tuberculosis Complex Isolates Isolated from Tuberculosis Patients in a University Hospital by Molecular Methods

Thesis Defense Exam Date: 28.11.2019


Seminars:

1-Advisor: Assist. Prof. Dr. Mahmut ÜLGER

Graduate Student: Doğan Can ASLAN

Seminar Topic: Hand Hygiene and Hand Washing Types

Seminar Presentation Date: 02.05.2019

2-Advisor: Prof. Dr. Mehmet Sami SERİN

Graduate Student: Seren OĞULTEKİN

Seminar Topic: General Properties of Viruses

Seminar Presentation Date: 05.05.2020

3-Advisor: Prof. Dr. Aylin DÖĞEN

PhD Student: Deniz AKTAŞ

Seminar Topic: Cryptococcus

Seminar Presentation Date: 08.05.2020

4-Advisor: Prof. Dr. Aylin DÖĞEN

PhD Student: Deniz AKTAŞ

Seminar Topic: Vaccines from Past to Present

Seminar Presentation Date: 22.12.2020


 


Publications in International Scientific Journals(last two years)

2024
56. Aktaş, D.; Kaplan, E.; Ergin, .; Ilkit, M.; Döğen, A. . MIKROBIYOLOJI BULTENI, 2024, 58, 39-48.
10.5578/mb.20249904
2023
55. Kaya, H.; Ersoy, L.; ülger, M.; Bozok, T.; Aslan, G. . INDIAN JOURNAL OF MEDICAL MICROBIOLOGY, 2023, 46, 100428-.
10.1016/j.ijmmb.2023.100428
54. Gonca, S.; Polat, B.; özay, Y.; özdemir, S.; Küçükkara, .; Atmaca, H.; Dizge, N. . ENVIRONMENTAL TECHNOLOGY, 2023, 44, 1238-1250.
10.1080/09593330.2021.2000036
53. Saleh, L.; Altıntaş, B.; Filiciotto, L.; Zorlu, Y.; Luque, R.; ülger, M.; Döndaş, H.; Altug, C. Structural assessment of novel spiro-naphthalene-1.2'-[1,3,4]oxadiazol-4-ones prepared under batch and flow chemistry with a concise antifungal and anti(myco)bacterial activity. TETRAHEDRON, 2023, 131, 133231-133231.
https://reader.elsevier.com/reader/sd/pii/S0040402022007554?token=74FBE2A44DA9DC38832A66CEAD47E264B9E6A5296F5CA83E7A83B708E9231706B338223346B68D05D250B137D357FDC8&originRegion=eu-west-1&originCreation=20230417074735://
52. Poyraz, S.; Dondas, H.; Sansano, J.; Belveren, S.; Yamalı, C.; Ulger, M.; Yaktubay dondas, N.; Saglık, B.; Pask, C. N-Benzoylthiourea-pyrrolidine carboxylic acid derivatives bearing an imidazole moiety: Synthesis, characterization, crystal structure, in vitro ChEs inhibition, and antituberculosis, antibacterial, antifungal studies. JOURNAL OF MOLECULAR STRUCTURE, 2023, 1273, 134303-134303.
https://reader.elsevier.com/reader/sd/pii/S0022286022019536?token=E3C74FA45C869E6F375F33ECA733A8521FB75FBA006886BFEAC011C88F7C2F0EDD8E53DE5882D6291282D642C7D72EAD&originRegion=eu-west-1&originCreation=20230417071905
51. Erdoğan eliuz, E.; Everest, Z.; Serin, M. . INFORMA UK LIMITED, 2023, 33, 1749-1759.
10.1080/09603123.2022.2123457
50. Eroğlu, P.; Civaner, M.; Doğan çalhan, S.; ülger, M.; Binzet, R. . ACTA CHIMICA SLOVENICA, 2023, 70, 196-203.
10.17344/acsi.2023.7998
49. özgür, D.; Ersoy, L.; ülger, M.; Tezcan ülger, S.; Aslan, G. . MIKROBIYOLOJI BULTENI, 2023, 57, 207-219.
10.5578/mb.20239916
48. Yalçın özkat, G.; Ersan, R.; ülger, M.; Tezcan ülger, S.; Burmaoğlu, S.; Yıldız, .; Algül, . Design, synthesis, and computational studies of benzimidazole derivatives as new antitubercular agents. JOURNAL OF BIOMOLECULAR STRUCTURE AND DYNAMICS, 2023, 41, 2667-2686.
Publications_038.pdf
47. Harmandar, K.; Gonca, S.; Küçük, T.; Günay, A.; Atilla, D.; özdemir, S.; Gürek, A. . WORLD SCIENTIFIC PUB CO PTE LTD, 2023, 27, 340-349.
10.1142/S1088424622501000
46. Kurnaz, N.; Tezcan ülger, S.; ülger, M.; Arslantürk, H.; Aslan, G.; Köksal, F. . MIKROBIYOLOJI BULTENI, 2023, 57, 45-59.
10.5578/mb.20239904
45. Eskikaya, B.; özdemir, S.; Gonca, S.; Dizge, N.; Balakrishnan, D.; Shaik, F.; Senthilkumar, N. . APPLIED NANOSCIENCE, 2023, 13, 5421-5433.
10.1007/s13204-023-02822-5
44. Yefimova, S.; Klochkov, V.; Kavok, N.; Tkachenko, A.; Onishchenko, A.; Chumachenko, T.; Dizge, N.; özdemir, S.; Gonca, S. . WILEY, 2023, 111, 872-880.
10.1002/jbm.b.35197
43. Poyraz, S.; Döndaş, H.; Sansano, J.; Belveren, S.; Yamalı, C.; ülger, M.; Döndaş, N.; Sağlık, B.; Pask, C. . JOURNAL OF MOLECULAR STRUCTURE, 2023, 1273, -.
10.1016/j.molstruc.2022.134303
42. Saleh, M.; ışık, Z.; Belibagli, P.; Arslan, H.; Gonca, S.; özdemir, S.; Kudaibergenov, N.; Khataee, A.; Dizge, N. . JOURNAL OF INDUSTRIAL AND ENGINEERING CHEMISTRY, 2023, 128, -.
10.1016/j.jiec.2023.08.018
41. Barçın, T.; Haj ersan, R.; Alagöz, M.; Döğen, A.; Burmaoglu, S.; Algül, . . ELSEVIER BV, 2023, 1295, -.
10.1016/j.molstruc.2023.136668
40. öksüz, Z.; Gragnani, L.; Lorini, S.; Temel, G.; Serin, M.; Zignego, A. . MDPI AG, 2023, 13, -.
10.3390/jpm13081188
39. Saleh, L.; Altıntaş, B.; Filiciotto, L.; Zorlu, Y.; Luque, R.; ülger, M.; Döndaş, H.; Altuğ, C. . TETRAHEDRON, 2023, 131, -.
10.1016/j.tet.2022.133231
38. Turabik, M.; özdemir, S.; Akinbingol, G.; Gonca, S.; Geçgel, C. . ELSEVIER BV, 2023, 155, -.
10.1016/j.inoche.2023.111072
37. Albayrak, S.; Farajzadeh, N.; Yenilmez, H.; özdemir, S.; Gonca, S.; Altuntaş bayır, Z. . CHEMISTRY & BIODIVERSITY, 2023, 20, -.
10.1002/cbdv.202300389
36. Karimi, F.; Tiri, R.; Aygun, A.; Gulbagca, F.; özdemir, S.; Gonca, S.; Gür, T.; şen, F. . ELSEVIER BV, 2023, 218, -.
10.1016/j.envres.2022.114757
35. ısik, Z.; Bouchareb, R.; Arslan, H.; özdemir, S.; Gonca, S.; Dizge, N.; Balakrishnan, D.; Prasad, S. . ELSEVIER BV, 2023, 219, -.
10.1016/j.envres.2022.115072
34. Bouras, H.; Bouras, N.; Alterkaoui, A.; ısik, Z.; Gonca, S.; özdemir, S.; Dizge, N. . WATER AIR SOIL POLLUT, 2023, 234, -.
10.1007/s11270-023-06465-8
33. Turunç, E.; Karaman, O.; Döğen, A.; Binzet, R. . ELSEVIER BV, 2023, 299, -.
10.1016/j.synthmet.2023.117453
32. Metin, D.; Hilmioğlu polat, S.; Döğen, A.; Palamar onay, M. . OVID TECHNOLOGIES (WOLTERS KLUWER HEALTH), 2023, 42, -.
10.1097/ICO.0000000000003270
31. Yamalı, C.; Sevin, S.; Nenni, M.; Tuğrak sakarya, M.; Uyar, R.; Aygül, A.; ülger, M.; Ilhan, R.; Levent, S. . CHAMICAL PAPERS, 2023, 77, -.
10.1007/s11696-023-03060-3
30. Karaman, O.; Turunç, E.; Döğen, A.; Binzet, R. . SPRINGER SCIENCE AND BUSINESS MEDIA LLC, 2023, 80, -.
10.1007/s00284-023-03286-0
29. özay, Y.; Alterkaoui, A.; Kahya, K.; özdemir, S.; Gonca, S.; Dizge, N.; Ocakoğlu, K.; Külekci, M. . IWA PUBLISHING, 2023, 87, -.
10.2166/wst.2022.396
28. ülger, M. . JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2023, , -.
10.1080/07391102.2023.2214224
2022
27. Demir karakuş, D.; özdemir, S.; Gonca, S.; Karagülle, N. . JOURNAL OF APPLIED POLYMER SCIENCE, 2022, 139, 1-11.
10.1002/app.52033
26. Burmaoğlu, S.; Akın kazancıoğlu, E.; Kazancıoğlu, M.; Alagöz, M.; Döğen, A.; Algül, . . POLYCYCLIC AROMATIC COMPOUNDS, 2022, , 1-14.
10.1080/10406638.2021.1962925
25. Gonca, S.; özdemir, S.; Tekgül, A.; ünlü, C.; Ocakoğlu, K.; Dizge, N. . ADVANCED POWDER TECHNOLOGY, 2022, 33, 103346-103355.
10.1016/j.apt.2021.10.038
24. ülger, M.; Tezcan ülger, S.; Bekçi, A.; Nar ötgün, S.; Delialioğlu, N.; Aslan, G. . MIKROBIYOLOJI BULTENI, 2022, 56, 11-24.
10.5578/mb.20229902
23. ülger, M.; Serin, M.; Tezcan ülger, S.; Aslan, G.; Ilvan, A.; Tiftik, E.; Emekdaş, G. . JOURNAL OF INFECTION IN DEVELOPING COUNTRIES, 2022, 16, 1166-1173.
10.3855/jidc.15831
22. Haj ersan, R.; Kuzu, B.; Yetkin, D.; Alagöz, M.; Döğen, A.; Burmaoğlu, S.; Algül, . . MEDICINAL CHEMISTRY RESEARCH, 2022, 31, 1192-1208.
10.1007/s00044-022-02900-3
21. Yılmaz, .; özdemir, S.; Gonca, S.; şimşek kuş, N.; Kaynarpınar, H. . MONATSHEFTE FUR CHEMIE - CHEMICAL MONTHLY, 2022, 153, 1225-1234.
10.1007/s00706-022-02989-7
20. ödemiş, .; özdemir, S.; Gonca, S.; Arslantaş, A.; Ağırtaş, M. . TURKISH JOURNAL OF CHEMISTRY, 2022, 46, 1417-1428.
10.55730/1300-0527.3448
19. öksüz, Z.; üçbilek, E.; Serin, M.; Yaraş, S.; Temel, G. . ARCHIVES OF VIROLOGY, 2022, 167, 153-161.
10.1007/s00705-021-05302-9
18. özgür, D.; Tezcan ülger, S.; Kayar, M.; Biçmen, C.; Aslantürk, A.; ülger, M.; Aslan, G. . MIKROBIYOLOJI BULTENI, 2022, 56, 191-205.
10.5578/mb.20229801
17. Haj ersan, R.; Alagöz, M.; Döğen, A.; Duran, N.; Burmaoğlu, S.; Algül, . . POLYCYCLIC AROMATIC COMPOUNDS, 2022, 42, 3103-3123.
10.1080/10406638.2020.1852589
16. Aftab, J.; Farajzadeh, N.; Yenilmez, Y.; özdemir, S.; Gonca, S.; Altuntaş bayır, Z. . DALTON TRANSACTIONS, 2022, 51, 4466-4476.
10.1039/D2DT00041E
15. Farajzadeh, N.; çelik, .; Yaşa atmaca, G.; özdemir, S.; Gonca, S.; Erdoğmuş, A.; Burkut koçak, M. . DALTON TRANSACTIONS, 2022, 51, 478-490.
10.1039/d1dt02919c
14. Ağırtaş, M.; Cabir, B.; Gonca, S.; özdemir, S. . POLYCYCLIC AROMATIC COMPOUNDS, 2022, 42, 5029-5043.
10.1080/10406638.2021.1922469
13. Farajzadeh, N.; Aftab, J.; Yenilmez, Y.; özdemir, S.; Gonca, S.; Altundaş bayır, Z. . NEW JOURNAL OF CHEMISTRY, 2022, 46, 5374-5384.
10.1039/D2NJ00484D
12. Farajzadeh, N.; çelik, .; özdemir, S.; Gonca, S.; Burkut koçak, M. . NEW JOURNAL OF CHEMISTRY, 2022, 46, 7177-7186.
10.1039/D1NJ05721A
11. Gümüşgöz çelik, G.; Gonca, S.; şahin, B.; özdemir, S.; Atilla, D.; Gürek, A. . DALTON TRANSACTIONS, 2022, 51, 7517-7529.
10.1039/D2DT00652A
10. Küçükosman, R.; ışık, Z.; özdemir, S.; Gonca, S.; Ocakoğlu, K.; Dizge, N. . BIONANOSCIENCE, 2022, 12, 804-813.
10.1007/s12668-022-00995-x
9. Farajzadeh, N.; özdemir, S.; Gonca, S.; Yaşa atmaca, G.; Erdoğmuş, A.; Altundaş bayır, Z.; Burkut koçak, M. . PHOTOCHEMISTRY AND PHOTOBIOLOGY, 2022, 98, 894-906.
10.1111/php.13553
8. Atsü, A.; Ergin, .; Caf, N.; Türkoğlu, Z.; Döğen, A.; Ilkit, M. . MYCOSES, 2022, 65, -708.
10.1111/myc.13450
7. Demirci, .; Gonca, S.; Tolan, V.; özdemir, S.; Dizge, N.; Kılınç, E. . CATALYSTS, 2022, 12, -.
10.3390/catal12101261
6. Gonca, S.; özdemir, S.; ışık, Z.; M'barek, I.; Shaik, F.; Dizge, N.; Balakrishnan, D. . FOOD AND CHEMICAL TOXICOLOGY, 2022, 165, -.
10.1016/j.fct.2022.113170
5. Geçgel, C.; Gonca, S.; Turabik, M.; özdemir, S. . MATERIALS TODAY SUSTAINABILITY, 2022, 19, -.
10.1016/j.mtsust.2022.100204
4. Eskikaya, B.; Arslan, H.; özdemir, S.; Gonca, S.; Dizge, N. . WATER AIR SOIL POLLUT, 2022, 233, -.
10.1007/s11270-022-06000-1
3. Belibagli, P.; ışık, Z.; özdemir, S.; Gonca, S.; Dizge, N.; Awasthi, M.; Balakrishnan, D. . CHEMOSPHERE, 2022, 308, -.
10.1016/j.chemosphere.2022.136216
2. öksüz, Z.; üçbilek, E.; Serin, M.; Yaraş, S.; Temel, G.; Sezgin, O. . CURRENT MICROBIOLOGY, 2022, 79, -.
10.1007/s00284-022-02882-w
1. Arslan, H.; Gonca, S.; ışık, Z.; özdemir, S.; Yalvaç, M.; Dizge, N.; Deepanraj, B.; Ashraf, G. . FRONTIERS IN MATERIALS, 2022, 9, -.
10.3389/fmats.2022.912066